If you don't want to be popped on your way anywhere make sure your route doesn't enter low security space. Click on map, click the autopilot tab, and click 'Prefer Safer'.

DONT use autopilot!
Q: "you cant expect me to do it manually right?"
A: "actually yes, and its rather simple"

1) First step is to set your destination (you'll also need to be in space (undocked))
next open your overview settings (its the right facing triangle, next to the words "OVERVIEW" funnily enough on your overview)
2) Click deselect all (down the bottom)
3) Open "Celestial" then scroll down to find "Stargate" (click the checkbox so its "ticked")
4) Close the window, and once again click the right facing triangle, and click "Save current config as..." and call it "Nav". You can set this up in a second tab.
Now if you have a destination set you will notice a yellow stargate in your overview
right click it
5) Click "Warp to within 0m"
Voila! you warp directly within jump range. Just saved you about a minute per jump.